YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FCERB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTENKSRAD LALPNPQESP SAPDIELLEA SPPAKALPEK PASPPPQQTW QSFLKKELEF  60
   61 LGVTQVLVGL ICLCFGTVVC STLQTSDFDD EVLLLYRAGY PFWGAVLFVL SGFLSIMSER 120
  121 KNTLYLVRGS LGANIVSSIA AGLGIAILIL NLSNNSAYMN YCKDITEDDG CFVTSFITEL 180
  181 VLMLLFLTIL AFCSAVLLII YRIGQEFERS KVPDDRLYEE LHVYSPIYSA LEDTREASAP 240
  241 VVS

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	83	0.89
Non-Cytoplasmic	84	97	0.82
Transmembrane Helix	98	117	0.93
Cytoplasmic	118	129	0.77
Transmembrane Helix	130	150	0.95
Non-Cytoplasmic	151	179	0.95
Transmembrane Helix	180	201	0.94
Cytoplasmic	202	243	0.98