YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148699726, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALLLALA FTLLSGQGAC AAAGTIQTSV QEVNSKTQLT CSLNSSGVDI VGHRWMRGGK  60
   61 VLQEDTLPDL HTKYIVDADD RSGEYSCIFL PEPVGRSEIN VEGPPRIKVG KKSEHSSEGE 120
  121 LAKLVCKSDA SYPPITDWFW FKTSDTGEEE AITNSTEANG KYVVVSTPEK SQLTISNLDV 180
  181 NVDPGTYVCN ATNAQGTTRE TISLRVRSRM AALWPFLGIV AEVLVLVTII FIYEKRRKPD 240
  241 QTLDEDDPGA APLKGSGTHM NDKDKNVRQR NAT

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	210	0.99
Transmembrane Helix	211	233	0.93
Cytoplasmic	234	273	0.98