YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCQISCKSR GRGGGGGGFR GFSSGSAVVS GGSRRSTSSF SCLSRHGGGG GGFGGGGFGS  60
   61 RSLVGLGGTK SISISVAGGG GGFGAAGGFG GRGGGFGGGS GFGGGSGFGG GSGFSGGGFG 120
  121 GGGFGGGRFG GFGGPGGVGG LGGPGGFGPG GYPGGIHEVS VNQSLLQPLN VKVDPEIQNV 180
  181 KAQEREQIKT LNNKFASFID KVRFLEQQNQ VLQTKWELLQ QMNVGTRPIN LEPIFQGYID 240
  241 SLKRYLDGLT AERTSQNSEL NNMQDLVEDY KKKYEDEINK RTAAENDFVT LKKDVDNAYM 300
  301 IKVELQSKVD LLNQEIEFLK VLYDAEISQI HQSVTDTNVI LSMDNSRNLD LDSIIAEVKA 360
  361 QYEEIAQRSK EEAEALYHSK YEELQVTVGR HGDSLKEIKI EISELNRVIQ RLQGEIAHVK 420
  421 KQCKNVQDAI ADAEQRGEHA LKDARNKLND LEEALQQAKE DLARLLRDYQ ELMNVKLALD 480
  481 VEIATYRKLL EGEECRMSGD LSSNVTVSVT SSTISSNVAS KAAFGGSGGR GSSSGGGYSS 540
  541 GSSSYGSGGR QSGSRGGSGG GGSISGGGYG SGGGSGGRYG SGGGSKGGSI SGGGYGSGGG 600
  601 KHSSGGGSRG GSSSGGGYGS GGGGSSSVKG SSGEAFGSSV TFSFR

Type	Start	End	Confidence
Cytoplasmic	1	70	0.61
Transmembrane Helix	71	91	0.86
Non-Cytoplasmic	92	103	0.69
Transmembrane Helix	104	126	0.83
Cytoplasmic	127	133	0.61
Transmembrane Helix	134	156	0.81
Non-Cytoplasmic	157	645	0.93