YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT5
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQSSVSFR SGGSRSFSTA SAITPSVSRT SFTSVSRSGG GGGGGFGRVS LAGACGVGGY  60
   61 GSRSLYNLGG SKRISISTRG GSFRNRFGAG AGGGYGFGGG AGSGFGFGGG AGGGFGLGGG 120
  121 AGFGGGFGGP GFPVCPPGGI QEVTVNQSLL TPLNLQIDPS IQRVRTEERE QIKTLNNKFA 180
  181 SFIDKVRFLE QQNKVLDTKW TLLQEQGTKT VRQNLEPLFE QYINNLRRQL DSIVGERGRL 240
  241 DSELRNMQDL VEDFKNKYED EINKRTTAEN EFVMLKKDVD AAYMNKVELE AKVDALMDEI 300
  301 NFMKMFFDAE LSQMQTHVSD TSVVLSMDNN RNLDLDSIIA EVKAQYEEIA NRSRTEAESW 360
  361 YQTKYEELQQ TAGRHGDDLR NTKHEITEMN RMIQRLRAEI DNVKKQCANL QNAIADAEQR 420
  421 GELALKDARN KLAELEEALQ KAKQDMARLL REYQELMNTK LALDVEIATY RKLLEGEECR 480
  481 LSGEGVGPVN ISVVTSSVSS GYGSGSGYGG GLGGGLGGGL GGGLAGGSSG SYYSSSSGGV 540
  541 GLGGGLSVGG SGFSASSGRG LGVGFGSGGG SSSSVKFVST TSSSRKSFKS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.72
Transmembrane Helix	12	32	0.54
Non-Cytoplasmic	33	44	0.70
Transmembrane Helix	45	66	0.77
Cytoplasmic	67	86	0.81
Transmembrane Helix	87	107	0.85
Non-Cytoplasmic	108	113	0.59
Transmembrane Helix	114	135	0.79
Cytoplasmic	136	505	0.91
Transmembrane Helix	506	527	0.80
Non-Cytoplasmic	528	540	0.55
Transmembrane Helix	541	575	0.55
Cytoplasmic	576	590	0.73