YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT18
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFTTRSTFST NYRSLGSVQA PSYGARPVSS AASVYAGAGG SGSRISVSRS TSFRGGMGSG  60
   61 GLATGIAGGL AGMGGIQNEK ETMQSLNDRL ASYLDRVRSL ETENRRLESK IREHLEKKGP 120
  121 QVRDWSHYFK IIEDLRAQIF ANTVDNARIV LQIDNARLAA DDFRVKYETE LAMRQSVEND 180
  181 IHGLRKVIDD TNITRLQLET EIEALKEELL FMKKNHEEEV KGLQAQIASS GLTVEVDAPK 240
  241 SQDLAKIMAD IRAQYDELAR KNREELDKYW SQQIEESTTV VTTQSAEVGA AETTLTELRR 300
  301 TVQSLEIDLD SMRNLKASLE NSLREVEARY ALQMEQLNGI LLHLESELAQ TRAEGQRQAQ 360
  361 EYEALLNIKV KLEAEIATYR RLLEDGEDFN LGDALDSSNS MQTIQKTTTR RIVDGKVVSE 420
  421 TNDTKVLRH

Type	Start	End	Confidence
Cytoplasmic	1	52	0.74
Transmembrane Helix	53	76	0.82
Non-Cytoplasmic	77	429	0.99