YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	contaminant_KERA...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STCSHQFTSS RSTKGSCSIG GSIRGGSSRI SSVLAGGSCH APSTYGGGLC VSFSRFSFGG  60
   61 ACGLGGGYGG GFGSSSSFAS GFGGGYGGGL GAGVGGGLGA GLGGGFAGGD GLLVGSEKVT 120
  121 MQHLSDRLAS YLDKVRALEE ANADLEVKIC DWYQRQRPSE IKDCSPYFKT IEDLRHKIIA 180
  181 ATIENAQPIL QIDNARLAAD DFRTNYEHEL ALRQTVEAGV NGLCRVLDEL TLARTDLEMQ 240
  241 MEGLKEELAY LRKNHEEEML ALRGQTGGEV NVEMDAAPGV DLSCILNEMR NQYEQMAKHN 300
  301 HRDAGXWFLS KTKELNKKVA SSSELVQSSR SEVTLLQRVF QGLEMELQSQ LSIKASLENS 360
  361 LEETKGCYCM QLSQIQGLIG SVEEQLAQLC CEMEQQSREY QILLDMKTRL EQEIATYRRL 420
  421 LEGEDAHLSS PHASGQSCSS RVVFTSSSSS SSRQTWPILK EQGSSSFSQG QCS

Type	Start	End	Confidence
Cytoplasmic	1	50	0.77
Transmembrane Helix	51	72	0.72
Non-Cytoplasmic	73	88	0.52
Transmembrane Helix	89	114	0.78
Cytoplasmic	115	473	0.73