YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Contaminant_KERA...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTCSRQFTSS SSMKGSCGIG GGIGAGSSRI SSVLAGGSCR APNTYGGGLS VSSSRFSSGG  60
   61 AYGLGGGYGG GFSSSSSSFG SGFGGGYGGG LGAGLGGGFG GGFAGGDGLL VGSEKVTMQN 120
  121 LNDRLASYLD KVRALEEANA DLEVKIRDWY QRQRPAEIKD YSPYFKTIED LRNKILTATV 180
  181 DNANVLLQID NARLAADDFR TKYETELNLR MSVEADINGL RRVLDELTLA RADLEMQIES 240
  241 LKEELAYLKK NHEEEMNALR GQVGGDVNVE MDAAPGVDLS RILNEMRDQY EKMAEKNRKD 300
  301 AEEWFFTKTE ELNREVATNS ELVQSGKSEI SELRRTMQNL EIELQSQLSM KASLENSLEE 360
  361 TKGRYCMQLA QIQEMIGSVE EQLAQLRCEM EQQNQEYKIL LDVKTRLEQE IATYRRLLEG 420
  421 EDAHLSSSQF SSGSQSSRDV TSSSRQIRTK VMDVHDGKVV STHEQVLRTK N

Type	Start	End	Confidence
Cytoplasmic	1	16	0.72
Transmembrane Helix	17	37	0.42
Non-Cytoplasmic	38	55	0.45
Transmembrane Helix	56	80	0.54
Cytoplasmic	81	82	0.28
Transmembrane Helix	83	111	0.67
Non-Cytoplasmic	112	471	0.52