YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRYSSSKH YSSSRSGGGG GGGGCGGGGG VSSLRISSSK GSLGGGFSSG GFSGGSFSRG  60
   61 SSGGGCFGGS SGGYGGLGGF GGGSFHGSYG SSSFGGSYGG SFGGGNFGGG SFGGGSFGGG 120
  121 GFGGGGFGGG FGGGFGGDGG LLSGNEKVTM QNLNDRLASY LDKVRALEES NYELEGKIKE 180
  181 WYEKHGNSHQ GEPRDYSKYY KTIDDLKNQI LNLTTDNANI LLQIDNARLA ADDFRLKYEN 240
  241 EVALRQSVEA DINGLRRVLD ELTLTKADLE MQIESLTEEL AYLKKNHEEE MKDLRNVSTG 300
  301 DVNVEMNAAP GVDLTQLLNN MRSQYEQLAE QNRKDAEAWF NEKSKELTTE IDNNIEQISS 360
  361 YKSEITELRR NVQALEIELQ SQLALKQSLE ASLAETEGRY CVQLSQIQAQ ISALEEQLQQ 420
  421 IRAETECQNT EYQQLLDIKI RLENEIQTYR SLLEGEGSSG GGGRGGGSFG GGYGGGSSGG 480
  481 GSSGGGYGGG HGGSSGGGYG GGSSGGGSSG GGYGGGSSSG GHGGGSSSGG HGGSSSGGYG 540
  541 GGSSGGGGGG YGGGSSGGGS SSGGGYGGGS SSGGHKSSSS GSVGESSSKG PRY

Type	Start	End	Confidence
Cytoplasmic	1	15	0.77
Transmembrane Helix	16	37	0.68
Non-Cytoplasmic	38	56	0.42
Transmembrane Helix	57	83	0.67
Cytoplasmic	84	84	0.20
Transmembrane Helix	85	115	0.48
Non-Cytoplasmic	116	116	0.33
Transmembrane Helix	117	142	0.72
Cytoplasmic	143	593	0.65