YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2119236, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCRQFSSSY LTSGGGGGGG LGSGGSIRSS YSRFSSSGGR GGGGRFSSSS GYGGGSSRVC  60
   61 GRGGGGSFGY SYGGGSGGGF SASSLGGGFG GGSRGFGGAS GGGYSSSGGF GGGFGGGSGG 120
  121 GFGGGYGSGF GGLGGFGGGA GGGDGGILTA NEKSTMQELN SRLASYLDKV QALEEANNDL 180
  181 ENKIQDWYDK KGPAAIQKNY SPYYNTIDDL KDQIVDLTVG NNKTLLDIDN TRMTLDDFRI 240
  241 KFEMEQNLRQ GVDADINGLR QVLDNLTMEK SDLEMQYETL QEELMALKKN HKEEMSQLTG 300
  301 QNSGDVNVEI NVAPGKDLTK TLNDMRQEYE QLIAKNRKDI ENQYETQITQ IEHEVSSSGQ 360
  361 EVQSSAKEVT QLRHGVQELE IELQSQLSKK AALEKSLEDT KNRYCGQLQM IQEQISNLEA 420
  421 QITDVRQEIE CQNQEYSLLL SIKMRLEKEI ETYHNLLEGG QEDFESSGAG KIGLGGRGGS 480
  481 GGSYGRGSRG GSGGSYGGGG SGGGYGGGSG SRGGSGGSYG GGSGSGGGSG GGYGGGSGGG 540
  541 HSGGSGGGHS GGSGGNYGGG SGSGGGSGGG YGGGSGSRGG SGGSHGGGSG FGGESGGSYG 600
  601 GGEEASGSGG GYGGGSGKSS HS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.72
Transmembrane Helix	10	29	0.64
Non-Cytoplasmic	30	67	0.57
Transmembrane Helix	68	92	0.69
Cytoplasmic	93	103	0.31
Transmembrane Helix	104	138	0.65
Non-Cytoplasmic	139	622	0.51