YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGE1
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	31	0.76
Non-Cytoplasmic	32	44	0.86
Transmembrane Helix	45	64	0.94
Cytoplasmic	65	74	0.80
Transmembrane Helix	75	97	0.87
Non-Cytoplasmic	98	103	0.68
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	131	0.90
Transmembrane Helix	132	154	0.90
Non-Cytoplasmic	155	162	0.84
Transmembrane Helix	163	184	0.91
Cytoplasmic	185	222	0.95
Transmembrane Helix	223	245	0.88
Non-Cytoplasmic	246	255	0.77
Transmembrane Helix	256	280	0.87
Cytoplasmic	281	296	0.93
Transmembrane Helix	297	321	0.85
Non-Cytoplasmic	322	344	0.85
Transmembrane Helix	345	364	0.91
Cytoplasmic	365	372	0.72
Transmembrane Helix	373	392	0.95
Non-Cytoplasmic	393	399	0.74
Transmembrane Helix	400	419	0.85
Cytoplasmic	420	443	0.70
Transmembrane Helix	444	466	0.82
Non-Cytoplasmic	467	508	0.84
Transmembrane Helix	509	530	0.87
Cytoplasmic	531	543	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTLSLTLC VISLLLTLFL AALDIVIVVT LYDTIGIKFH DFGNIGWLVT GYALSNAVFM  60
   61 LLWGRLAEIL GTKECLMISV IVFEIGSLIS ALSNSMATLI SGRVVAGFGG SGIESLAFVV 120
  121 GTSIVRENHR GIMITALAIS YVIAEGVGPF IGGAFNEHLS WRWCFYINLP IGAFAFIILA 180
  181 FCNTSGEPHQ KMWLPSKIKK IMNYDYGELL KASFWKNTFE VLVFKLDMVG IILSSAGFTL 240
  241 LMLGLSFGGN NFPWNSGIII CFFTVGPILL LLFCAYDFHF LSLSGLHYDN KRIKPLLTWN 300
  301 IASNCGIFTS SITGFLSCFA YELQSAYLVQ LYQLVFKKKP TLASIHLWEL SIPAMIATMA 360
  361 IAYLNSKYGI IKPAIVFGVL CGIVGSGLFT LINGELSQSI GYSILPGIAF GSIFQATLLS 420
  421 SQVQITSDDP DFQNKFIEVT AFNSFAKSLG FAFGGNMGAM IFTASLKNQM RSSQLNIPQF 480
  481 TSVETLLAYS TEHYDGPQSS LSKFINTAIH DVFYCALGCY ALSFFFGIFT SSKKTTISAK 540
  541 KQQ