YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	167	0.73
Transmembrane Helix	168	186	0.62
Non-Cytoplasmic	187	198	0.53
Transmembrane Helix	199	220	0.50
Cytoplasmic	221	240	0.74
Transmembrane Helix	241	261	0.67
Non-Cytoplasmic	262	272	0.65
Transmembrane Helix	273	294	0.88
Cytoplasmic	295	333	0.73
Transmembrane Helix	334	353	0.94
Non-Cytoplasmic	354	371	0.84
Transmembrane Helix	372	394	0.81
Cytoplasmic	395	407	0.74
Transmembrane Helix	408	427	0.95
Non-Cytoplasmic	428	480	0.90
Transmembrane Helix	481	501	0.91
Cytoplasmic	502	556	0.92
Transmembrane Helix	557	576	0.94
Non-Cytoplasmic	577	582	0.78
Transmembrane Helix	583	603	0.91
Cytoplasmic	604	614	0.64
Transmembrane Helix	615	635	0.76
Non-Cytoplasmic	636	665	0.76
Transmembrane Helix	666	685	0.83
Cytoplasmic	686	733	0.78
Transmembrane Helix	734	752	0.95
Non-Cytoplasmic	753	778	0.71
Transmembrane Helix	779	798	0.79
Cytoplasmic	799	810	0.78
Transmembrane Helix	811	832	0.96
Non-Cytoplasmic	833	877	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETVKDKVI IDEKVSTKGT VDYAEGAEYS ERLSNHSSDF SQWYTDEQIL HFMKKLGYEN  60
   61 RTLYDIPEDV AYILKKMPEL TLEDSFKILK DSIIYFKDDE NIPHDQYEEW KRLVDLEDLD 120
  121 SKEGIDEYDS FDIRAFASAI KFHSPYQEVR AVVDPEDDPT IPVETFRAYF LAIIWSVIGS 180
  181 GFNEFFSHRV VSISLNTPII QMFLYICGKA WAKTIPCWTI TIRGRKYGIN IDKPWTQKEQ 240
  241 MFSTLLYAIC QGAFYTHYNI LTQKLFYHSA FSFGYQFLLS LSVQFIGFGF AGILRKFVVY 300
  301 PARALWPTVM PTIAINKALL GKEKHESGMS RYKFFFLTFF IMFIYNWFPT YIINILNTFN 360
  361 WMTWIKPSNI NLANITGGVT GLGINPISSF DWNVISFNSP LVYPFWSYLT QYLGCILAAL 420
  421 IVIAVYYSNY MSCQYLPIFT NSLYTNTGHS FKVTEVLDSD NKLDVKKYQS YSPPYYSAGN 480
  481 LVSYGAFICA YPLMITWSFI VHSKLLFNAF KDWALNLWAM RKLKSWVTMF KSDYRALDDY 540
  541 DDPHSNAMKN YKEVPDWWYF AILIGSLVVG IAVVEHYPTN TPVWGLFVCL GFNFVFLIPT 600
  601 TILQATTGYS FGLNLLIEMV MGYALPGNPI AIMILKAFGY NIDGQADNYV SNLKIAHYCK 660
  661 IPPMALFRGQ CVIVFIQIFV NLGVLNWQIS NIKDFCTPHQ NAKFTCPDAV TYYNASVVWG 720
  721 AIGPKRIFNY IYPIFKWCWL IGACIGIFFG VWKRWGKFYP RYFDPMLFVG GMLNMSPPYN 780
  781 LMYYTSGMIV SYISQYYMKR HHLNLWEKYN YVLSAGFSTG LVLSAIIIFF AVQYKDTAFN 840
  841 WWGNTVPYAG ADGVGYPLKN ITDTANGYFG YAPGHYP