YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110820592, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTYPPHAVD KYSRGASLVV VSETQPSHEH EPHVPLPVEI PVTENIADDA LDLKTQIIRF  60
   61 VLTGGLSAIV DFGLYVLLFE VVGLPVNVAK SISFIAGTTT AYLINRRWTF KAEPSRARFV 120
  121 AVVILYAVTF AVQVGLNWVM YHAFPDEWWR LPLAFVIAQG TATVINFVVQ RAVIFKIH

Type	Start	End	Confidence
Cytoplasmic	1	59	0.96
Transmembrane Helix	60	79	0.92
Non-Cytoplasmic	80	85	0.79
Transmembrane Helix	86	105	0.89
Cytoplasmic	106	118	0.81
Transmembrane Helix	119	141	0.88
Non-Cytoplasmic	142	150	0.82
Transmembrane Helix	151	170	0.92
Cytoplasmic	171	178	0.74