YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPO3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	180	0.98
Transmembrane Helix	181	203	0.90
Non-Cytoplasmic	204	215	0.76
Transmembrane Helix	216	235	0.96
Cytoplasmic	236	245	0.81
Transmembrane Helix	246	265	0.94
Non-Cytoplasmic	266	271	0.72
Transmembrane Helix	272	294	0.88
Cytoplasmic	295	304	0.82
Transmembrane Helix	305	327	0.90
Non-Cytoplasmic	328	336	0.83
Transmembrane Helix	337	363	0.81
Cytoplasmic	364	410	0.92
Transmembrane Helix	411	431	0.88
Non-Cytoplasmic	432	446	0.84
Transmembrane Helix	447	469	0.92
Cytoplasmic	470	487	0.98
Transmembrane Helix	488	507	0.96
Non-Cytoplasmic	508	513	0.73
Transmembrane Helix	514	536	0.89
Cytoplasmic	537	555	0.82
Transmembrane Helix	556	575	0.89
Non-Cytoplasmic	576	582	0.81
Transmembrane Helix	583	604	0.94
Cytoplasmic	605	622	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRQESINSF NSDETSSLSD VESQQPQQYI PSESGSKSNM APNQLKLTRT ETVKSLQDMG  60
   61 VSSKAPVPDV NAPQSSKNKI FPEEYTLETP TGLVPVATLH SIGRTSTAIS RTRTRQIDGA 120
  121 SSPSSNEDAL ESDNNEKGKE GDSSGANDEA PDLDPEIEFV TFVTGDPENP HNWPAWIRWS 180
  181 YTVLLSILVI CVAYGSACIS GGLGTVEKKY HVGMEAAILS VSLMVIGFSL GPLIWSPVSD 240
  241 LYGRRVAYFV SMGLYVIFNI PCALAPNLGS LLACRFLCGV WSSSGLCLVG GSIADMFPSE 300
  301 TRGKAIAFFA FAPYVGPVVG PLVNGFISVS TGRMDLIFWV NMAFAGVMWI ISSAIPETYA 360
  361 PVILKRKAAR LRKETGNPKI MTEQEAQGVS MGEMMRACLL RPLYFSVTEP VLVATCFYVC 420
  421 LIYSLLYAFF FAFPVIFGEL YGYKDNLVGL MFIPIVIGAL WALATTFYCE NKYLQIVKQR 480
  481 KPTPEDRLLG AKIGAPFAAI ALWILGATAY KHIIWVGPAS AGLAFGFGMV LIYYSLNNYI 540
  541 IDCYVQYASS ALATKVFLRS AGGAAFPLFT IQMYHKLNLH WGSWLLAFIS TAMIALPFAF 600
  601 SYWGKGLRHK LSKKDYSIDS IE