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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCA2
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINRRILKS FEEISHSLEE SLREVAFDSQ QQLIQDVREE NEELSRLQDQ LQLIRSIVEK  60
   61 ICISIKTDNI DSYCSVPFDL LYNICKDIAD PSSFEDGDLQ YLVSQAIFEY IILLCYYSVT 120
  121 NECVQGLPAV YEAEQYYKTV SDSILKSFLY CLQNSVSTIR LLSQTVLKDV NKKKLSHQKW 180
  181 SLKALSVDLL EKIRPRINKF MVIRNFRFVG LPKKPIEIAS LVSDIPRGIV HERLDMVTQS 240
  241 SKYYTIKLGQ LITEFDQQPE ENGMFTEVHL PNYERRLKSL QDFFGLAMSD SNLLDVIRCS 300
  301 AKFHKDHPLR RFTKPSILTR YWPSILLCLL YGPSSVMSLW NSRYFIQDFI KTNVVDFAKG 360
  361 LILNWLWAPL KQVWSTVKHD EGSAISVTSQ ETLNSDMDSL TRMIVSFVVD NSDSTSNSPI 420
  421 DPILLSTKVE HGDLTEFMEI YETQLHHPIK NIATGGLVRS LLIQLQKTKV DGSMALNGID 480
  481 KMLKSQQLVF GVVALSPALV ILYSSIVALK RFVKLGNVWS NEKRYREQIS ISLNNVERVL 540
  541 NYSKQGADAD EEHLNQGLLV IEVSNLYKLG SFLIPRSRKK EWFRDVEELV DTNLDSGAHI 600
  601 NVVNRIYHVY GRFLIH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle