YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190408007
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNGTEDKSN IPARSNDDVL PPLAVRLTMK VMRLIFIGKM FAYSFVPFPP FKLLTFDNTV  60
   61 GWFVAYSAIV SIWGFAVWME RGYRHKINLL PPRCTKIRCS RCNTRIRSPN WFKYKNWLYF 120
  121 FLLYVSLTTS NLIIQLASFM TEMSRRGISV PGTKDPGKRD YLGLIIPMRF IGAFIHYMTA 180
  181 NLFKEYYLHN GPLEKNDRPS TDEKTSENET L

Type	Start	End	Confidence
Cytoplasmic	1	34	0.90
Transmembrane Helix	35	51	0.88
Non-Cytoplasmic	52	58	0.71
Transmembrane Helix	59	79	0.89
Cytoplasmic	80	116	0.90
Transmembrane Helix	117	139	0.89
Non-Cytoplasmic	140	211	0.60