YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEFPSPQL IDDLEEHPQH DNARVVKDLL AGTAGGIAQV LVGQPFDTTK VRLQTSSTPT  60
   61 TAMEVVRKLL ANEGPRGFYK GTLTPLIGVG ACVSLQFGVN EAMKRFFHHR NADMSSTLSL 120
  121 PQYYACGVTG GIVNSFLASP IEHVRIRLQT QTGSGTNAEF KGPLECIKKL RHNKALLRGL 180
  181 TPTILREGHG CGTYFLVYEA LIANQMNKRR GLERKDIPAW KLCIFGALSG TALWLMVYPL 240
  241 DVIKSVMQTD NLQKPKFGNS ISSVAKTLYA NGGIGAFFKG FGPTMLRAAP ANGATFATFE 300
  301 LAMRLLG

Type	Start	End	Confidence
Cytoplasmic	1	76	0.93
Transmembrane Helix	77	99	0.80
Non-Cytoplasmic	100	119	0.81
Transmembrane Helix	120	138	0.81
Cytoplasmic	139	216	0.96
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	283	0.84
Transmembrane Helix	284	302	0.49
Cytoplasmic	303	307	0.59