YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYASSIHS QMKQFDTKYS GNRILQQLEN KTNLPKSYLV AGLGFAYLLL IFINVGGVGE  60
   61 ILSNFAGFVL PAYLSLVALK TPTSTDDTQL LTYWIVFSFL SVIEFWSKAI LYLIPFYWFL 120
  121 KTVFLIYIAL PQTGGARMIY QKIVAPLTDR YILRDVSKTE KDEIRASVNE ASKATGASVH 180
  181

Type	Start	End	Confidence
Cytoplasmic	1	36	0.91
Transmembrane Helix	37	56	0.86
Non-Cytoplasmic	57	60	0.60
Transmembrane Helix	61	79	0.72
Cytoplasmic	80	89	0.59
Transmembrane Helix	90	110	0.82
Non-Cytoplasmic	111	116	0.52
Transmembrane Helix	117	136	0.75
Cytoplasmic	137	180	0.82