YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YPR003C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	144	0.65
Transmembrane Helix	145	167	0.71
Non-Cytoplasmic	168	202	0.68
Transmembrane Helix	203	226	0.84
Cytoplasmic	227	232	0.86
Transmembrane Helix	233	253	0.90
Non-Cytoplasmic	254	285	0.89
Transmembrane Helix	286	307	0.92
Cytoplasmic	308	318	0.83
Transmembrane Helix	319	338	0.73
Non-Cytoplasmic	339	371	0.66
Transmembrane Helix	372	393	0.72
Cytoplasmic	394	410	0.45
Transmembrane Helix	411	433	0.90
Non-Cytoplasmic	434	440	0.45
Transmembrane Helix	441	461	0.89
Cytoplasmic	462	466	0.39
Transmembrane Helix	467	488	0.78
Non-Cytoplasmic	489	506	0.61
Transmembrane Helix	507	535	0.79
Cytoplasmic	536	754	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNNSLLGR GRMSYSSTAP PRFKRSVDQR DTFSDNFDYD KDSSNRGRTY IAASNSTTGV  60
   61 PPPNNSRSGC TNNTNNTNNT SNTSNTNNND SVDENTVFET LPYYLPCFSW LPEYTFNKLW 120
  121 GDVIAGISVA SFQIPLALSY TTSIAHVPPL CGLYSLAISP FVYGILGSVP QMIVGPESAI 180
  181 SLVVGQAVES ITLHKENVSL IDISTVITFV SGTILLFSGI SRFGFLGNVL SKALLRGFIS 240
  241 SVGLVMIINS LISELKLDKF LVSLPQHYHT PFEKILFLID YAPAQYHIPT AIFSGCCLIV 300
  301 LFLTRLLKRK LMKYHKSAIF FPDILLVVIV TILISMKFNL KHRYGISIIG DFSMDNFDEL 360
  361 KNPLTRPRRK LIPDLFSASL IVAMLGFFES TTASKSLGTT YNLTVSSNRE LVALGFMNIV 420
  421 ISLFGALPAF GGYGRSKINA LSGAQSVMSG VFMGVITLIT MNLLLQFVHY IPNCVLSVIT 480
  481 TIIGISLLEE VPGDIKFHLR CGGFSELFVF AVTFCTTIFY SIEAGICIGC VYSIINIIKH 540
  541 SAKSRIQILA RVAGTSNFTN LDDYMMNMKR NSLDVEGTEE IEGCMIVRIP EPLTFTNSED 600
  601 LKQRLDRIER YGSSKIHPGR KSLRSKDSIK YVIFDLGGMT SIDSSAAQVL EEIITSYKRR 660
  661 NVFIYLVNVS INDKVRRRLF KAGVAASVER AQANNNENNT SNTFSDAGET YSPYFDSIDA 720
  721 ALYEIEKMKI KGNNVPNNDS ESFMSNTLFN SSLV