YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110818629, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSPVSLVL GSCRPAQRRL CGRGSGGWAA ASVPTLGTMA SVDQLSLSAF DDDAKRRDLR  60
   61 KMKAVATGFL VFATVVYLVC RWQESRGAGA WVGYVRAASE AGMVGALADW FAVTALFRHP 120
  121 LGLPIPHTAI IKRKKDQLGA SLGNFVGQNF LAPEVVSAKV EAAEIPLRLG RWMAQPKHAA 180
  181 RVAAETATIL RGFVEILRDE DVQQIIDSTL VRRLAEPQWG PPIGRVLGEL LRENRQLPIL 240
  241 DLLAERAHQW ALGSQETIDR IVSRDSPAWS PKFVDAMLGE KIHRELVEFT WKVRSNPEHE 300
  301 VRQAANRFLV DFADDLQNDP ATMEKAEKIK AEIMGREEVT GLAAATWTVA KRLIMESVDD 360
  361 PNSTLRTKVA ENVVRFGERL RDDHELRVKV DGWVLAGTRY VVVHYTDEIT AIISDTVERW 420
  421 DAEEASKKIE LQVGRDLQFI RINGTVVGSI AGLLIYTFST LLFG

Type	Start	End	Confidence
Cytoplasmic	1	63	0.70
Transmembrane Helix	64	82	0.77
Non-Cytoplasmic	83	96	0.71
Transmembrane Helix	97	117	0.62
Cytoplasmic	118	438	0.75
Transmembrane Helix	439	460	0.82
Non-Cytoplasmic	461	464	0.65