YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407708
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAHANERIS DVSPSARGSS SESKYDKLCR VLFFIAITKS SFTPEHILYK HSIFTDKPIL  60
   61 ADIVTFMYAA FVSIGWFLIW GERAYRTQEM GQPPMYSNIN YHLLSFKKRH PKKFTCALWL 120
  121 VFFLAYTVLT VLIWLVQLIF RKGNVFQMLL QLIILDIAIA LVNVAIAFTF EIYLSQKAAI 180
  181 EIRDEGLNNL DTA

Type	Start	End	Confidence
Cytoplasmic	1	27	0.63
Transmembrane Helix	28	48	0.52
Non-Cytoplasmic	49	58	0.87
Transmembrane Helix	59	80	0.92
Cytoplasmic	81	115	0.93
Transmembrane Helix	116	138	0.92
Non-Cytoplasmic	139	151	0.77
Transmembrane Helix	152	173	0.90
Cytoplasmic	174	193	0.94