YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSO1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNNPYQLE TPFEESYELD EGSSAIGAEG HDFVGFMNKI SQINRDLDKY DHTINQVDSL  60
   61 HKRLLTEVNE EQASHLRHSL DNFVAQATDL QFKLKNEIKS AQRDGIHDTN KQAQAENSRQ 120
  121 RFLKLIQDYR IVDSNYKEEN KEQAKRQYMI IQPEATEDEV EAAISDVGGQ QIFSQALLNA 180
  181 NRRGEAKTAL AEVQARHQEL LKLEKSMAEL TQLFNDMEEL VIEQQENVDV IDKNVEDAQL 240
  241 DVEQGVGHTD KAVKSARKAR KNKIRCWLIV FAIIVVVVVV VVVPAVVKTR

Type	Start	End	Confidence
Cytoplasmic	1	265	0.97
Transmembrane Helix	266	287	0.95
Non-Cytoplasmic	288	290	0.90