YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GUP2
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.81
Transmembrane Helix	74	94	0.80
Non-Cytoplasmic	95	131	0.81
Transmembrane Helix	132	152	0.87
Cytoplasmic	153	163	0.76
Transmembrane Helix	164	185	0.84
Non-Cytoplasmic	186	200	0.66
Transmembrane Helix	201	218	0.92
Cytoplasmic	219	242	0.62
Transmembrane Helix	243	261	0.47
Non-Cytoplasmic	262	327	0.75
Transmembrane Helix	328	350	0.74
Cytoplasmic	351	366	0.87
Transmembrane Helix	367	388	0.91
Non-Cytoplasmic	389	402	0.83
Transmembrane Helix	403	422	0.88
Cytoplasmic	423	470	0.92
Transmembrane Helix	471	495	0.77
Non-Cytoplasmic	496	502	0.78
Transmembrane Helix	503	523	0.91
Cytoplasmic	524	530	0.91
Transmembrane Helix	531	555	0.87
Non-Cytoplasmic	556	575	0.90
Transmembrane Helix	576	594	0.93
Cytoplasmic	595	609	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLRIWSCI VHFFSVQALD SRIKPDIEFK RRQRIFINSS KEENGSSSSA VTVTRNPVLS  60
   61 SNSPSPPLWN TWEFRLYYLA FTVVVPFMIK AALATSSESN PNYYKFSGLL AHGWILGRKV 120
  121 DNSDPQYRFF RSNFFLLAIL ILLQIILKKV FVKFSKIPKT KFDFACGLVF VCFMYGINSV 180
  181 KLFTHAFIFF TLAHSLKRKR LIAAFAIWSY GIFTLFINQK MKNLPFNNIA IILSPMDQWY 240
  241 KGIVPRWDFF FNFTLLRLLS YSMDFLERWH EQLSRQPSID YDDRRPEFRK SLSGSTLQTI 300
  301 YESGKNVLEE KERLVAEHHI QDYNFINFIA YITYAPLFLV GPIITFNDYL YQSENKLPSL 360
  361 TKKNIGFYAL KVFSSLLLME IILHYIYVGA IARTKAWNND TPLQQAMIAL FNLNIMYLKL 420
  421 LIPWRLFRLW AMVDGIDAPE NMLRCVDNNY STVGFWRAWH TSFNKWVIRY IYVPFGGSNN 480
  481 KILTSFAVFS FVAIWHDIQL RVLFWGWLTV LLLLGETYIT NCFSRYRFRS WYRFVCGIGA 540
  541 AINICMMMII NVYGFCLGAE GTKLLLKGIF NNSHSPEFLT AVMVSLFIAV QVMFEIREEE 600
  601 KRHGINLKC