YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YPL162C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVSNGKDTC QLLGPVSLFV QTLMGMTAVI VLLVKRNYEH PRRKMIVWSY DIGKQIIGSL  60
   61 GIHFLNLGIS ILKKRRRSLF AITAKGNDDE DQCDWYFLNL LLDTTVGIPI LWLCLYIIEK 120
  121 VLKSLHFQNI ESGNYFPSKT VGSHPRKPLF SAFVKQLLIF IVGLGVMKFC VFLILNYLED 180
  181 LAYWFADLIL GWSDSWPNFQ VFLVMFVFPI LLNCFQYFCV DNVIRLHSES LTITNAENFE 240
  241 TNTFLNDEIP DLSEVSNEVP NKDNNISSYG SII

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.65
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	51	0.58
Transmembrane Helix	52	72	0.70
Non-Cytoplasmic	73	95	0.48
Transmembrane Helix	96	116	0.45
Cytoplasmic	117	155	0.94
Transmembrane Helix	156	178	0.91
Non-Cytoplasmic	179	198	0.94
Transmembrane Helix	199	220	0.92
Cytoplasmic	221	273	0.99