YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC62
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEQTQENM SAVGPGSNAG ASVNGGSATA IATLLRNHKE LKQRQGLFQA KQTDFFRYKR  60
   61 FVRALHSEEY ANKSARQPEI YPTIPSNKIE DQLKSREIFI QLIKAQMVIP VKKLHSQECK 120
  121 EHGLKPSKDF PHLIVSNKAQ LEADEYFVWN YNPRTYMDYL IVIGVVSIIL ALVCYPLWPR 180
  181 SMRRGSYYVS LGAFGILAGF FAVAILRLIL YVLSLIVYKD VGGFWIFPNL FEDCGVLESF 240
  241 KPLYGFGEKD TYSYKKKLKR MKKKQAKRES NKKKAINEKA EQN

Type	Start	End	Confidence
Cytoplasmic	1	155	0.67
Transmembrane Helix	156	179	0.88
Non-Cytoplasmic	180	186	0.66
Transmembrane Helix	187	211	0.84
Cytoplasmic	212	283	0.70