YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSWPYPEA PIEGYWGKPT SLIDWCEENY VVSPYIAEWS NTITNSIFLM TAFYSTYSAW  60
   61 RNKLETRYIL IGMGFSLVGI GSWLFHMTLQ YRYQLLDELP MLYATIIPSW SIFAETQEIL 120
  121 IKDEKKRKES SFRIQMVISF IMCGIVTILT WIYVVVQKPA IFQVLYGILT LLVVVLSGWL 180
  181 TYYHVHDSFA KKNLFITMVM GMIPFVIGFI CWQLDIHLCS FWIYIRRTYL ALPLGVLLEL 240
  241 HAWWHLLTGT GVYIFVVYLQ YLRILTHGNP NDFLFIWRWG FFPELVRKGL PIGTSYSLEY 300
  301 LGPIVNTQVD DETKKNN

Type	Start	End	Confidence
Cytoplasmic	1	67	0.61
Transmembrane Helix	68	87	0.96
Non-Cytoplasmic	88	98	0.75
Transmembrane Helix	99	114	0.91
Cytoplasmic	115	133	0.78
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	161	0.85
Transmembrane Helix	162	183	0.94
Cytoplasmic	184	193	0.87
Transmembrane Helix	194	214	0.94
Non-Cytoplasmic	215	240	0.89
Transmembrane Helix	241	262	0.89
Cytoplasmic	263	317	0.94