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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114053449
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNKLLLVWF FVVTLVLGYV FSETEFEVLL EIKKSFLDDP ENVLSNWSDK NQNFCQWSGV  60
   61 SCEEDTLKVV RLNLSDCSIS GSISPSIGFL HDLLHLDLSS NLLSGPIPPT LSNLSSLQSL 120
  121 LLYSNQLTGP IPNEIGLLKN LQVLRIGDNV GLTGLIPSSL GDLENLVTLG LASCSLSGMI 180
  181 PPELGKLGRI ENMNLQENQL ENEIPSEIGN CSSLVAFSVA VNNLNGSIPE ELSMLKNLQV 240
  241 MNLANNSISG QIPTQLGEMI ELQYLNLLGN QLEGSIPMSL AKLSNVRNLD LSGNRLTGEI 300
  301 PGEFGNMDQL QVLVLTSNNL SGGIPKTICS SNGNSSLEHM MLSENQLSGE IPVELRECIS 360
  361 LKQLDLSNNT LNGSIPVELY ELVELTDLLL NNNTLVGSVS PLIANLTNLQ TLALSHNSLH 420
  421 GNIPKEIGMV ENLEILFLYE NQFSGEIPME IGNCSRLQMI DFYGNAFSGR IPITIGGLKE 480
  481 LNFIDFRQND LSGEIPASVG NCHQLKILDL ADNRLSGSVP ATFGYLRALE QLMLYNNSLE 540
  541 GNLPDELINL SNLTRINFSH NKLNGSIASL CSSTSFLSFD VTNNAFDHEV PPHLGYSPFL 600
  601 ERLRLGNNRF TGEIPWTLGL IRELSLLDLS GNELTGLIPP QLSLCRKLTH LDLNNNRLYG 660
  661 SIPFWLGNLP LLGELKLSSN KFSGPLPREL FNCSKLLVLS LEDNSINGTL PLEIGELKSL 720
  721 NILNFDKNQL SGPIPSTIGN LSKLYILRLS GNSLTGEIPS ELGQLKNLQS ILDLSFNNIS 780
  781 GQIPPSVGTL TKLETLDLSH NHLTGEVPPQ VGEMSSLGKL NLSYNNLQGK LDKQYAHWPA 840
  841 DAFTGNPRLC GSPLQNCEVS KSNNRGSGLS NSTVVIISVI STTVAIILML LGAALFFKQR 900
  901 REAFRSEVNS AYSSSSSQGQ KKPLFASVAA KRDIRWDDIM EATNNLSNDF IIGSGGSGTV 960
  961 YKAELFIGEI VAIKRIPSKD DLLLDKSFAR EIKTLWRIRH RHLVRLLGYC NNSGEGSNVL1020
 1021 IYEYMENGSV WDWLHKQPAN NNKRKTCLDW EARLKIAVGL AQGVEYLHHD CVPKIIHRDI1080
 1081 KSSNILLDSN MEAHLGDFGL AKAVHDNYNS YNTESNLWFA GSFGYIAPEY AYSSKATEKS1140
 1141 DVYSMGIVLM ELVTGRMPTD GSFGEDIDMV RWIESCIEMS REELIDPVLK PLLPNEESAA1200
 1201 LQVLEIALEC TKTAPAERPS SRKVCDLLLH AFNDKVVHSD KMSPDNYV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle