YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPE10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAFPRVLPF RHQRSYNNIL LRTVRLFGSS LSSFDFSRQM PKVDPDNTAA MLLQKNLIQR  60
   61 NNMLYGYGSG TIRCTLLDST GRAKSPLVEI KREDLVSKHG LLPRDLRKIE KSRKNDLVPS 120
  121 LLVRENSILI SLLTVKALIK PDMVIIFDSA GSGITLNSEA HKDFINDMKL RLKNQETSEL 180
  181 NSDPLPYEFR ALETIFISAL SNLTSEMKVL LTICKGVLQD LEFSITRDKL RFLLGQNKKL 240
  241 SSFNKKAVLV KDMLDDLLEQ DDMLCDMYLT DKKAGKIRVQ DDHTEIEMLL ETYHNYVDEI 300
  301 VQKSESAISD VKTTEEIINI ILDSNRNELM LLGIRYAIGM LSLGGALFLG SIYGMNLESF 360
  361 IEESNYAYLT VTILGLISTV WLYAKGIRHL HKLQRMTLLS KIKTDSVHEL LKK

Type	Start	End	Confidence
Cytoplasmic	1	331	0.95
Transmembrane Helix	332	355	0.87
Non-Cytoplasmic	356	365	0.86
Transmembrane Helix	366	385	0.95
Cytoplasmic	386	413	0.93