YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87248555, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLLRLGGG MAGLSQAPPP TDAPAVDTAE QVYISSLALL KMLKHGRAGV PMEVMGLMLG  60
   61 EFVDDYTVRV IDVFAMPQTG TGVSVEAVDP VFQAKMLDML KQTGRPEMVV GWYHSHPGFG 120
  121 CWLSGVDINT QQSFEALSER AVAVVVDPIQ SVKGKVVIDA FRLINSNMMV LGQEPRQTTS 180
  181 NLGHLQKPSV QALIHGLNRH YYSISINYRK NELEQKMLLN LHKKSWMDGL TLSDYKEHCS 240
  241 VNESTVTDML ELAKNYNKAL EDEEKMTPEQ LAIKNVGKQD PKRHLEEKVD VLMANNIVQC 300
  301 LGAMLDTLVF K

Type	Start	End	Confidence
Signal Peptide	1	23	0.52
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	311	0.99