YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407679
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	32	0.85
Non-Cytoplasmic	33	45	0.67
Transmembrane Helix	46	69	0.79
Cytoplasmic	70	79	0.78
Transmembrane Helix	80	101	0.91
Non-Cytoplasmic	102	126	0.87
Transmembrane Helix	127	149	0.86
Cytoplasmic	150	213	0.92
Transmembrane Helix	214	233	0.96
Non-Cytoplasmic	234	239	0.81
Transmembrane Helix	240	259	0.94
Cytoplasmic	260	268	0.91
Transmembrane Helix	269	290	0.92
Non-Cytoplasmic	291	309	0.86
Transmembrane Helix	310	331	0.91
Cytoplasmic	332	341	0.81
Transmembrane Helix	342	364	0.92
Non-Cytoplasmic	365	375	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNPVISNH KLSHYIHVFC TFTTFCILGT ETRQAITALS TYTPAFVTAP TVLWSNCSSC  60
   61 MLMGIMQSLN AYTWMKDHQV LFLGVTTGYC GALSSFSSML LEMFEHSTNL TNGNIANHTK 120
  121 LPNRAYGIME FLSVLLVHLM VSMGSLIFGR QLGKEVIVAY GSSSFSKPYT PPSDTVKENA 180
  181 GDVDTQEMEK NILEFKFKTP APFFKKFFDI VDKLAYALAF PLIILFVVLC AYYENYSRGK 240
  241 WTLPCLFGIF AGFLRYWLAE MFNKTNKKFP LGTFLANVFA TLLIGIFTMV QRGKKHFSTD 300
  301 VPIVNSLNSC HIVSALISGF CGTLSTISTF INEGYKLSFI NMLIYYTVSI AISYCLLVIT 360
  361 LGSYAWTRGL TNPIC