YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407672
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSTIFGAT TVMTAVSAAA VSSVMTTKTI TATNGNNVYT KVVTDTADPI ISYSTTRTVV  60
   61 VSNSDATYTK VVTEGPDTTS EKSTTKTLTL TNGSGSSTNL YTKTVTQAVE SSTSSSSSSS 120
  121 SSSSSASSSG AAPAAFQGAS VGALALGLIS YLL

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	129	0.97
Transmembrane Helix	130	152	0.71
Cytoplasmic	153	153	0.77