YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRE3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	165	0.99
Transmembrane Helix	166	187	0.91
Cytoplasmic	188	237	0.70
Transmembrane Helix	238	256	0.86
Non-Cytoplasmic	257	280	0.59
Transmembrane Helix	281	301	0.79
Cytoplasmic	302	317	0.60
Transmembrane Helix	318	341	0.77
Non-Cytoplasmic	342	351	0.67
Transmembrane Helix	352	374	0.90
Cytoplasmic	375	380	0.56
Transmembrane Helix	381	398	0.92
Non-Cytoplasmic	399	406	0.50
Transmembrane Helix	407	425	0.62
Cytoplasmic	426	460	0.71
Transmembrane Helix	461	476	0.42
Non-Cytoplasmic	477	711	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYWVLLCGSI LLCCLSGASA SPAKTKMYGK LPLVLTDACM GVLGEVTWEY SSDDLYSSPA  60
   61 CTYEPALQSM LYCIYESLNE KGYSNRTFEK TFAAIKEDCA YYTDNLQNMT NADFYNMLNN 120
  121 GTTYIIQYSE GSANLTYPIE MDAQVRENYY YSYHGFYANY DIGHTYGGII CAYFVGVMIL 180
  181 ASILHYLSYT PFKTALFKQR LVRYVRRYLT IPTIWGKHAS SFSYLKIFTG FLPTRSEGVI 240
  241 ILGYLVLHTV FLAYGYQYDP YNLIFDSRRE QIARYVADRS GVLAFAHFPL IALFAGRNNF 300
  301 LEFISGVKYT SFIMFHKWLG RMMFLDAVIH GAAYTSYSVF YKDWAASKEE TYWQFGVAAL 360
  361 CIVGVMVFFS LAMFRKFFYE AFLFLHIVLG ALFFYTCWEH VVELSGIEWI YAAIAIWTID 420
  421 RLIRIVRVSY FGFPKASLQL VGDDIIRVTV KRPVRLWKAK PGQYVFVSFL HHLYFWQSHP 480
  481 FTVLDSIIKD GELTIILKEK KGVTKLVKKY VCCNGGKASM RLAIEGPYGS SSPVNNYDNV 540
  541 LLLTGGTGLP GPIAHAIKLG KTSAATGKQF IKLVIAVRGF NVLEAYKPEL MCLEDLNVQL 600
  601 HIYNTMEVPA LTPNDSLEIS QQDEKADGKG VVMATTLEQS PNPVEFDGTV FHHGRPNVEK 660
  661 LLHEVGDLNG SLAVVCCGPP VFVDEVRDQT ANLVLEKPAK AIEYFEEYQS W