YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOR365C
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.92
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	202	0.99
Transmembrane Helix	203	224	0.90
Cytoplasmic	225	242	0.80
Transmembrane Helix	243	265	0.92
Non-Cytoplasmic	266	377	0.96
Transmembrane Helix	378	400	0.89
Cytoplasmic	401	415	0.94
Transmembrane Helix	416	437	0.78
Non-Cytoplasmic	438	453	0.74
Transmembrane Helix	454	478	0.87
Cytoplasmic	479	516	0.96
Transmembrane Helix	517	537	0.88
Non-Cytoplasmic	538	544	0.71
Transmembrane Helix	545	565	0.86
Cytoplasmic	566	571	0.88
Transmembrane Helix	572	595	0.80
Non-Cytoplasmic	596	607	0.74
Transmembrane Helix	608	633	0.85
Cytoplasmic	634	703	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIKVFSLS RIFVLLAIFR QIHAISINSS TFQVSNSFTL LNNASTLFPV PFDAYTKEYL  60
   61 RTSALLTCAK DSQFSASYFE AAFFPRNNTL FFNVEAQTIM SENITIKAEL IAYGLNVYTK 120
  121 VFDLCGIQDN LLCPLKPGNI ELMGSYYVEA AVASQIPSIT YNIPDLDAYI VVTAYSTIDK 180
  181 EFTKPLACVQ VMLSNGRTVQ TEYLSWNLVI LTISGIMFSV VYSLQGYTVT STRLASYSIS 240
  241 LLLYFQNLAI LAMISVSFLP PIVAAWTQNF QWSMGIIRIN FMQRLFDWYV VATSGSPTVV 300
  301 YRNKEVLSIS VQKRSLNSKI ISASSNLNGI ESSQKNDLLY TSNLRNSNDY LSKILVLRGI 360
  361 KRVSYKAGIE ISNFFLTGFS FFIIFICMII LAFIIFKTFL KVLQKFKVKT IRYLHFHTHW 420
  421 SALLQGTLYR AVFIIYSEIS LLALWEFTQT DSAATLVEAI VVFILITVLL SSASVRIWRK 480
  481 MIKSKKIFGQ PSYLLFSSSK FLNKFGFLSS QFKSTKVWWL MATSAHMLIR SILVGSLQAH 540
  541 GKSQSIGIFL NEAIYLILLC WMQPYMDKTT NFFNISIHSL NLVNAFFFLF FSNLFQQPIA 600
  601 VSSFMGLIFF FLNAAFSLYL FIFILICFTM AIYYKHPDTR YKPIDDQRRS FLKGEMDDDA 660
  661 VYESVPELHE MKKAVLECNG IQKPQINKID LCKQNSNCEY LYM