YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGK1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEDAIALP NSTLEPRTEA KQRLSSKSHQ VSAKVTIPAK EEISSSDDDA HVPVTEIHLK  60
   61 SHEWFGDFIT KHEIPRKVFH SSIGFITLYL YTQGINYKNV LWPLIYAFII LFILDLIRLN 120
  121 WPFFNMLYCR TVGALMRKKE IHTYNGVLWY ILGLIFSFNF FSKDVTLISL FLLSWSDTAA 180
  181 ATIGRKYGHL TPKVARNKSL AGSIAAFTVG VITCWVFYGY FVPAYSYVNK PGEIQWSPET 240
  241 SRLSLNMLSL LGGVVAALSE GIDLFNWDDN FTIPVLSSLF MNAVIKTFKK

Type	Start	End	Confidence
Cytoplasmic	1	77	0.95
Transmembrane Helix	78	95	0.89
Non-Cytoplasmic	96	101	0.80
Transmembrane Helix	102	121	0.93
Cytoplasmic	122	140	0.89
Transmembrane Helix	141	161	0.90
Non-Cytoplasmic	162	199	0.48
Transmembrane Helix	200	222	0.89
Cytoplasmic	223	242	0.40
Transmembrane Helix	243	262	0.65
Non-Cytoplasmic	263	270	0.59
Transmembrane Helix	271	288	0.56
Cytoplasmic	289	290	0.73