YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLY41
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.73
Transmembrane Helix	82	99	0.63
Non-Cytoplasmic	100	115	0.74
Transmembrane Helix	116	137	0.90
Cytoplasmic	138	173	0.97
Transmembrane Helix	174	196	0.85
Non-Cytoplasmic	197	206	0.71
Transmembrane Helix	207	228	0.82
Cytoplasmic	229	235	0.89
Transmembrane Helix	236	257	0.91
Non-Cytoplasmic	258	268	0.86
Transmembrane Helix	269	290	0.93
Cytoplasmic	291	333	0.93
Transmembrane Helix	334	354	0.93
Non-Cytoplasmic	355	379	0.78
Transmembrane Helix	380	403	0.79
Cytoplasmic	404	421	0.65
Transmembrane Helix	422	440	0.84
Non-Cytoplasmic	441	453	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQTQSTAIK RRNSVHKNLF DPSLYQIPEP PRGGFQHQKK EYSKETFSNQ VFGYDITSLK  60
   61 KRFTQLFPSN IQGYLPEVDL RITIICSIWY VTSSISSNLS KAILRTFNHP IALTELQFLV 120
  121 SAVLCVGFAS IVNLFRLPRL KHTKFSKALN SFPDGILPEY LDGNFRSSIL HKFLVPSKLV 180
  181 LMTTFPMGIF QFIGHITSHK AVSMIPVSLV HSVKALSPII TVGYYKFFEH RYYNSMTYYT 240
  241 LLLLIFGVMT TCWSTHGSKR ASDNKSGSSL IGLLFAFISM IIFVAQNIFA KNILTIRRKV 300
  301 GILPSSSTDD VTSKEGQPSL DKTRFSPLQV DKITILFYCS CIGFSLTLLP FLTGELMHGG 360
  361 SVINDLTLET VALVAIHGIA HFFQAMLAFQ LIGLLSSINY SVANIMKRIV VISVALFWET 420
  421 KLNFFQVFGV ILTIAGLYGY DKWGLSKKDG RQA