YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAX1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEELSKVSS MQNFEMIQRE RLPTLYEVLI QRTSQPVDLW TFYTFLSQFP YAINYLDFWV  60
   61 DLMTHTRLCK NYIELVRKSL INFPQEQQQN GSTSTATFDL LNALIEEGHL DPEAPDKLLE 120
  121 NSGPDVPFSP KLNELLGDWK HQSGIGQEAL RNEDVALIVD EIMKRRSQQD GKPQITTKQL 180
  181 LHSAVGLCNT YLVSPEQSER YLSNIPMETR NRIIESVQIE RKYDIEIFDD LKNLTYQFLE 240
  241 MDCFPKFLSR VALHNIHDEI SDWRFHSVGV TNEKSNRSRG QTHISRSPFS NHTSISRIGF 300
  301 GLLWLGIGFW IGYVLIFLAY SRAIRVVTVV PFTLGCYCIV CGMYQVDIVY SWFGVTQRLL 360
  361 HRHKNAGNDE GDASSDTDHV PMILAVFGGR RRLTRIEHPF TRQLLRKRGL WCLLLVVGAT 420
  421 AAFTVIFSCV PGRRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	297	0.73
Transmembrane Helix	298	319	0.91
Cytoplasmic	320	325	0.62
Transmembrane Helix	326	346	0.82
Non-Cytoplasmic	347	378	0.59
Transmembrane Helix	379	393	0.34
Cytoplasmic	394	408	0.68
Transmembrane Helix	409	430	0.93
Non-Cytoplasmic	431	435	0.61