YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151945374
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLQLFGRDQ IVVHYDNGNM SNDDQNHQSV LGSWTRRAAA ALRTLMNKRI QRITLTHWLL  60
   61 LVIWVTSLWK FTSHYRQLYA NSAVFATLCT NILLFGISDI LAQSIACFYS YHVDPIPQIL 120
  121 NDTFHHVQNN RDVENGGGYE SDELSIFNDF TSEHSSYTDN DDYPELDRPL ATFKTDTFDF 180
  181 FRWGCFMFWG FFISFFQAPW YKFLNFFYTE DPTVVQVFER VLSDQLLYSP ISLYCFFMFS 240
  241 NYVMEGGDKD TLGKKIQRLY ISTLGCNYLV WPMVQFINFL IMPRDFQAPF SSSVGVVWNC 300
  301 FLSMRNASK

Type	Start	End	Confidence
Cytoplasmic	1	52	0.98
Transmembrane Helix	53	72	0.92
Non-Cytoplasmic	73	78	0.82
Transmembrane Helix	79	102	0.81
Cytoplasmic	103	179	0.97
Transmembrane Helix	180	200	0.92
Non-Cytoplasmic	201	225	0.91
Transmembrane Helix	226	244	0.90
Cytoplasmic	245	258	0.86
Transmembrane Helix	259	279	0.86
Non-Cytoplasmic	280	285	0.72
Transmembrane Helix	286	304	0.66
Cytoplasmic	305	309	0.56