YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPO4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.99
Transmembrane Helix	92	114	0.89
Non-Cytoplasmic	115	127	0.80
Transmembrane Helix	128	149	0.90
Cytoplasmic	150	157	0.85
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	187	0.66
Transmembrane Helix	188	209	0.89
Cytoplasmic	210	216	0.85
Transmembrane Helix	217	239	0.90
Non-Cytoplasmic	240	249	0.86
Transmembrane Helix	250	272	0.87
Cytoplasmic	273	317	0.93
Transmembrane Helix	318	337	0.94
Non-Cytoplasmic	338	353	0.78
Transmembrane Helix	354	376	0.91
Cytoplasmic	377	424	0.98
Transmembrane Helix	425	445	0.84
Non-Cytoplasmic	446	453	0.75
Transmembrane Helix	454	477	0.85
Cytoplasmic	478	493	0.55
Transmembrane Helix	494	509	0.75
Non-Cytoplasmic	510	518	0.61
Transmembrane Helix	519	538	0.96
Cytoplasmic	539	659	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSLTKTES NSDPRTNIQQ VPKALDKNVT NSGNLDSTSS STGSITEDEK RSEPNADSNN  60
   61 MTGGEPIDPR DLDWDGPDDP DNPHNWSSLK KWYTTMTSAF LCLVVTMGSS LYVSSVPELV 120
  121 ERYHVSQTLA LAGLTFYLLG LSTVIGAPLS EVFGRKPVYL FSLPVSMLFT MGVGLSNGHM 180
  181 RIILPLRFLS GVFASPALSV GSGTILDIFD VDQVSVAMTY FVLSPFLGPV LSPIMAGFAT 240
  241 EAKGWRWSEW IQLIAGGLIL PFIALMPETH KGIILRKRAK KRNIALKKFS REAQKEFLKT 300
  301 TVTITILRPL KMLVVEPIVF VFSVYVAFIF AILFGFFEAY AVIYRGVYHM SMGISGLPFI 360
  361 GIGVGLWIGA FFYLYIDRKY LFPKPPAGTQ PLTEKERTSK RTTPYRGARD AETGELLPVV 420
  421 PEKFLIACKF GSVALPIGLF WQAWTARSDV HWMAPVAAGV PFGFGLILIF FSVLMYFSTC 480
  481 YPPLTVASCL AANNLLRYVM SSVFPLFTIQ MYTKMKIKWA STLFALVCVV MIPIPWVFEK 540
  541 WGSKLRHKSQ FGYAAMEKEA ETEGGIDDVN AVDGELNLTR MTTLRTMETD PSTREKPGER 600
  601 LSLRRTHTQP VPASFDREDG QHAQNRNEPI SNSLYSAIKD NEDGYSYTEM ATDASARMV