YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407573
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVPGPID LPESRYDLST YWGRIRHCAE ISDPTMLLTT EKDLAHAREI ISAYRHGELK  60
   61 ETTPEFWRAK KQLDSTVHPD TGKTVLLPFR MSSNVLSNLV VTVGMLTPGL GTAGTVFWQW 120
  121 ANQSLNVAVN SANANKSHPM STSQLLTNYA AAVTASCGVA LGLNNLVPRL KNISPHSKLI 180
  181 LGRLVPFAAV VSAGIVNVFL MRGNEIRKGI SVFDSNGDEV GKSKKAAFMA VGETALSRVI 240
  241 NATPTMVIPP LILVRLQRGV LKGKSLGVQT LANLGLISVT MFSALPFALG IFPQRQAIHL 300
  301 NKLEPELHGK KDKDGKPIEK VYFNRGI

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	118	0.87
Non-Cytoplasmic	119	146	0.92
Transmembrane Helix	147	167	0.92
Cytoplasmic	168	178	0.91
Transmembrane Helix	179	201	0.91
Non-Cytoplasmic	202	235	0.93
Transmembrane Helix	236	256	0.69
Cytoplasmic	257	269	0.65
Transmembrane Helix	270	291	0.89
Non-Cytoplasmic	292	327	0.78