YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407551
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPRILPYY DPAVERKIAV VTGGNTGIGW YTVLHLYLHG FVVYICGRNS HKISKAIQEI  60
   61 LAEAKKRCHE DDDGSSPGAG PGPSIQRLGS LHYIHLDLTD LKCVERAALK ILKLEDHIDV 120
  121 LVNNAGIMAV PLEMTKDGFE VQLQTNYISH FIFTMRLLPL LRHCRGRIIS LSSIGHHLEF 180
  181 MYWKLSKTWD YKPNMLFTWF RYAMSKTALI QCTKMLAIKY PDVLCLSVHP GLVMNTNLFS 240
  241 YWTRLPIVGI FFWLLFQVVG FFFGVSNEQG SLASLKCALD PNLSVEKDNG KYFTTGGKES 300
  301 KSSYVSNNVD EAASTWIWTV HQLRDRGFDI

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.61
Transmembrane Helix	28	47	0.50
Cytoplasmic	48	241	0.75
Transmembrane Helix	242	265	0.85
Non-Cytoplasmic	266	330	0.54