YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407532
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEPLLPTH NGSQGGEVRS PDQKFIVIRF SDVSVRDLQL NISNVPFSNI NTHWLRRMCR  60
   61 ELRPQQTQKR RLKFIRNGSI LNTHSKIAEE LTHYFDTANN SNVATGTSVA PEQNNYYIHC 120
  121 IIGTEELTQA ELANEDLKDD ATPSNDSMTT QAIGFDRLRS VGFTEQEIEL LRQQFRATYG 180
  181 DLEEEEERLA QNGNRDDEGH DIRQLEEQWM ESGSGTAQGN GAGGGNEDRF NSVPIANIKH 240
  241 NKDLLLGICV GFFFGVFGIL LMKFDGLFNR RQKMAIFAGV IVNVMFCLVR GF

Type	Start	End	Confidence
Cytoplasmic	1	243	0.69
Transmembrane Helix	244	264	0.93
Non-Cytoplasmic	265	272	0.57
Transmembrane Helix	273	291	0.79
Cytoplasmic	292	292	0.73