YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190407524
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLYLSSLF FAFFMAQVFA TKYSITFTSD EYEEDETGQN EPGPLVFHLD KNSLPPALLN  60
   61 QMEFNPYLVL ADLPEEPRAV DSQEHTDTVL ASKSVIDFLL EDPLTIVEHK KFSQIESILH 120
  121 EIMEDSIQKK VGADEVFEEI PKPKIYAYED ILVTNMSIIN NSEMPTSTAT LTSTISYLSS 180
  181 TTSLALSTGV TSVEIFPTIT PGNITTIGGY ENSSSSLMPS MGILSFLFGL YLLLHP

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	215	0.94
Transmembrane Helix	216	235	0.74
Cytoplasmic	236	236	0.54