YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.99
Transmembrane Helix	83	105	0.91
Non-Cytoplasmic	106	128	0.92
Transmembrane Helix	129	150	0.94
Cytoplasmic	151	157	0.86
Transmembrane Helix	158	177	0.95
Non-Cytoplasmic	178	182	0.77
Transmembrane Helix	183	202	0.93
Cytoplasmic	203	227	0.90
Transmembrane Helix	228	251	0.92
Non-Cytoplasmic	252	271	0.87
Transmembrane Helix	272	291	0.78
Cytoplasmic	292	296	0.67
Transmembrane Helix	297	314	0.89
Non-Cytoplasmic	315	331	0.78
Transmembrane Helix	332	353	0.92
Cytoplasmic	354	366	0.68
Transmembrane Helix	367	387	0.85
Non-Cytoplasmic	388	393	0.59
Transmembrane Helix	394	412	0.55
Cytoplasmic	413	433	0.70
Transmembrane Helix	434	457	0.88
Non-Cytoplasmic	458	468	0.71
Transmembrane Helix	469	491	0.82
Cytoplasmic	492	539	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNEKYERP PQPPPAYDPN HRPPSSSENS AAANVNDGQT PYHFRQDQYY NLNSKTSGAP  60
   61 IGSFDEAFPT ENDNKPRWND WPFTIFFLCT VGGFIAIAAI TLRAWSQTYS STGSGIYDGV 120
  121 NTGTLNTNAA ILLVFVCIIA LVFSVLGLTL CRIFPKQFIY CGMVINLVAS LGTAIMYMSL 180
  181 RYWSAGIVFL VFTFMTAWCY WGMRSRIPLS VAVLKVVVDA MKKCPQIFFV SFVGALVASA 240
  241 FGFLFSAVIV ATYIKYDPNS SNGGCDVSGG SCSHSKLIGV LVVVFFCGYY ISEVIRNVIH 300
  301 CVISGVFGSW YYMSKSDQGM PRWPAFGALK RAMTYSFGSI CFGSLLVALI DLLRQILQMI 360
  361 RHDVTSSGGG QIAIQILFMV FDWIIGFLKW LAEYFNHYAY SFIALYGKPY LRAAKETWYM 420
  421 LREKGMDALI NDNLINIALG LFSMFASYMT ALFTFLYLRF TSPQYNSNGA YNGALMAFSF 480
  481 VIALQICNIA TEAIRSGTAT FFVALGNDPE VFHHSYPHRF DEIFRAYPDV LRKLSHQNV