YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ORT1
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSKKKGLI EGAILDIING SIAGACGKVI EFPFDTVKVR LQTQASNVFP TTWSCIKFTY  60
   61 QNEGIARGFF QGIASPLVGA CLENATLFVS YNQCSKFLEK HTNVFPLGQI LISGGVAGSC 120
  121 ASLVLTPVEL VKCKLQVANL QVASAKTKHT KVLPTIKAII TERGLAGLWQ GQSGTFIRES 180
  181 FGGVAWFATY EIVKKSLKDR HSLDDPKRDE SKIWELLISG GSAGLAFNAS IFPADTVKSV 240
  241 MQTEHISLTN AVKKIFGKFG LKGFYRGLGI TLFRAVPANA AVFYIFETLS AL

Type	Start	End	Confidence
Cytoplasmic	1	263	0.48
Transmembrane Helix	264	286	0.51
Non-Cytoplasmic	287	292	0.72