YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVCKLKEIV PLFPRSSFTD GVVSTGKSFR SWDTCMDNKA CKIIAIVGIV LACILVIWLI  60
   61 GGLLTCFRQG VTGIGQFICW CCRCSNDRNG NNTMPVNEGF SRVNMGVAPP STVIYQPIQQ 120
  121 PESAYYRNDA KNDTFYDEVK TPSNEVYELE EDFDLEKQKE KTRKKQQKER NKEGRSPSRV 180
  181 APLVYEEENF EGSSPQPQYD ARNSFIQNAA NTGSNNAHVA SQSPIFDISD YGENYYYDNN 240
  241 NINNNLQGNS YNTPSSNHRS PYPTENYQSY QGYKPNQSDR YY

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	62	0.89
Non-Cytoplasmic	63	282	0.93