YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATX2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLGVILLA SFLLIATFLI GLIPLYYIDK QKSSIVTNQE GADSISDFTT NADTQTINDD  60
   61 VSSYRVKIAV LSQFGIGMLL GTSFMLVIPE GIKACVEHDG NVGVNLLIGF LGVYVLDRLV 120
  121 TLWVSRKQTV YTHDAVKFQS WKDIINHPRQ IWMNLIQNNV VFALFIHGLS DGIALGTTTN 180
  181 NDSLLIVVLI AIVIHKIPAV LSLTSLMVSR QNLMKWEVIC NVFLFASSTP IGYIVLSLLN 240
  241 LSHSPTMDWI SGNLLLMSGG SLLYASFTAF VGGDSHDHDL SVEQEVVLPH DESVYVLIGV 300
  301 CIPLVISYCI SEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	28	0.92
Cytoplasmic	29	69	0.79
Transmembrane Helix	70	89	0.86
Non-Cytoplasmic	90	101	0.58
Transmembrane Helix	102	120	0.75
Cytoplasmic	121	154	0.84
Transmembrane Helix	155	175	0.81
Non-Cytoplasmic	176	183	0.75
Transmembrane Helix	184	207	0.87
Cytoplasmic	208	217	0.80
Transmembrane Helix	218	239	0.89
Non-Cytoplasmic	240	249	0.73
Transmembrane Helix	250	272	0.82
Cytoplasmic	273	313	0.64