YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114045684, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILETIMNK PPIIWLNVIL FSLTFLSAII LVPWYGLTQG FGASEWIAFV VLAFASGLSI  60
   61 TAGYHRLWSH KAYKAHPAVR FLYALGGALA LQNSALHWAS DHRVHHKHVD DNDKDPYSAK 120
  121 MGFWYSHIGW MLREYQAQRY HDYQNVRDLQ NDRIVMWQHK HYLALVILMN IGLPALLGWF 180
  181 TGNIAGMLLM AGLLRLVVVH HCTFFINSLA HVWGNQPYTD KNTARDNGFL AMLTYGEGYH 240
  241 NFHHIFENDY RNGIKWWHYD PTKWLIKALS WVGLATDLRT SPQERIESAR LQMQLLHAKN 300
  301 KVIHLPNADE IIEKIQQEYE LMKEHLLEYY QAKKALLEAK RKQLVDQQLL LQVEELKTRF 360
  361 LTQQKSWKSL TASYS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.97
Transmembrane Helix	13	35	0.93
Non-Cytoplasmic	36	45	0.78
Transmembrane Helix	46	68	0.90
Cytoplasmic	69	78	0.91
Transmembrane Helix	79	99	0.64
Non-Cytoplasmic	100	163	0.67
Transmembrane Helix	164	198	0.72
Cytoplasmic	199	375	0.54