YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113971342, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLFISLYL LLSLSFLGIG WTLDSLWQKN VDENNALDAP LVALAQLLTQ LPEENRNAYL  60
   61 EALPSHDQLP LNLLSPDQIA LAKDQQLTPN HVVTTTTSEG EQFQFIQVGE QVLMAGPIEI 120
  121 DPRASLRNLF TLFFYLSLAL VALIWVGPLS RDLSILRKAT KDFGEAKWDT RISLSNRSQV 180
  181 KPLANTFNEM ARHISALIEN QKHLSNAVSH EIRTPLARLK FALALMPMYC QPDSDEQKRQ 240
  241 DFLNEMQLDI KEMENLLQEL LTYASLEAQR EGTPLDEYDL LSLVNQCIKR LSSLSDTPIR 300
  301 LQAEMTSLPL VGEPALIERA LQNLLTNAQR FARQQILIEV SQTPQRVTLS VSNDGEPIPE 360
  361 VDLPMVFEPF YRSQSVQNGN KGHGLGLAII KRIMQRHQGE VSVSSNPTQT CFTLSWPKKR 420
  421 EI

Type	Start	End	Confidence
Signal Peptide	1	22	0.82
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	130	0.90
Transmembrane Helix	131	149	0.69
Cytoplasmic	150	422	0.62