YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	77	0.93
Non-Cytoplasmic	78	110	0.92
Transmembrane Helix	111	130	0.94
Cytoplasmic	131	139	0.77
Transmembrane Helix	140	160	0.93
Non-Cytoplasmic	161	166	0.87
Transmembrane Helix	167	188	0.94
Cytoplasmic	189	199	0.82
Transmembrane Helix	200	220	0.88
Non-Cytoplasmic	221	230	0.78
Transmembrane Helix	231	252	0.90
Cytoplasmic	253	316	0.94
Transmembrane Helix	317	335	0.80
Non-Cytoplasmic	336	355	0.83
Transmembrane Helix	356	377	0.88
Cytoplasmic	378	384	0.92
Transmembrane Helix	385	406	0.94
Non-Cytoplasmic	407	426	0.89
Transmembrane Helix	427	450	0.90
Cytoplasmic	451	461	0.90
Transmembrane Helix	462	484	0.87
Non-Cytoplasmic	485	489	0.78
Transmembrane Helix	490	510	0.92
Cytoplasmic	511	567	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVNNTSAN ELSTTMSNSN SAVGAPSVKT EHGDSKNSLN LDANEPPIDL PQKPLSAYTT  60
   61 VAILCLMIAF GGFIFGWDTG TISGFVNLSD FIRRFGQKND KGTYYLSKVR MGLIVSIFNI 120
  121 GCAIGGIVLS KVGDIYGRRI GLITVTAIYV VGILIQITSI NKWYQYFIGR IISGLGVGGI 180
  181 AVLSPMLISE VAPKHIRGTL VQLYQLMGTM GIFLGYCTNY GTKNYHNATQ WRVGLGLCFA 240
  241 WATFMVSGMM FVPESPRYLI EVGKDEEAKR SLSKSNKVSV DDPALLVEYD TIKAGIELEK 300
  301 LAGNASWSEL LSTKTKVFQR VLMGVMIQSL QQLTGDNYFF YYGTTIFKSV GLKDSFQTSI 360
  361 IIGVVNFFSS FIAVYTIERF GRRTCLLWGA ASMLCCFAVF ASVGVTKLWP QGSSHQDITS 420
  421 QGAGNCMIVF TMFFIFSFAT TWAGGCYVIV SETFPLRVKS RGMAIATAAN WMWGFLISFF 480
  481 TPFITGAINF YYGYVFLGCL VFAYFYVFFF VPETKGLTLE EVNTMWLEGV PAWKSASWVP 540
  541 PERRTADYDA DAIDHDNRPI YKRFFSS