YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPS68
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADDHVSLF RFPFKIPTFR GIRKGGVYLS GALYALGFWI FLDAVLYSRY SNASDVHVTF  60
   61 IDWIPFLCST LGTLIVNSIE KNRLLQGALS SDGGAFGSGV GDLDSSMAWQ ARTVLFFGFA 120
  121 LLAGGLSGSI VVLIIKFLVK DYNTYPTLGM GVNNVLGNVC ILLSCVVLWI AQNVEDEYSY 180
  181 SLTL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.91
Transmembrane Helix	25	42	0.95
Non-Cytoplasmic	43	58	0.75
Transmembrane Helix	59	79	0.80
Cytoplasmic	80	113	0.61
Transmembrane Helix	114	138	0.89
Non-Cytoplasmic	139	149	0.49
Transmembrane Helix	150	171	0.89
Cytoplasmic	172	184	0.52