YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHR5
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDSHQKEED NANTSERALF FNYHEFSYSF YEDLGSEDAK PTEHDEDHKL CITHFPNVYA  60
   61 ARGSAEFQVT RVVRVPRRFD ESRSSLETPQ FSTQLPGSEP AAIVGDDGTS FVRCGRYDIG 120
  121 DHVFGCSSVS PLSEYLSAAE LAEVVHRVNG FLLREEGEVF GWRNLSGLLL DMLTGGLWSW 180
  181 VLGPLLSRPV FQESLALEQY VAQLNSPGGL LHERGVRLVL PRRSGCLSLD FVVPRPK

Type	Start	End	Confidence
Cytoplasmic	1	159	0.56
Transmembrane Helix	160	182	0.52
Non-Cytoplasmic	183	237	0.92